Genome-wide characterization and expression analysis of MADS-box transcription factor gene family in <i>Perilla frutescens</i>

doi:10.3389/fpls.2023.1299902

	Genome-wide characterization and expression analysis of MADS-box transcription factor gene family in Perilla frutescens
	Liang, Mengjing 1; Du, Zhongyang 1; Yang, Ze 1; Luo, Tao 1; Ji, Chunli 1; Cui, Hongli2 ; Li, Runzhi 1
发表期刊	FRONTIERS IN PLANT SCIENCE
ISSN	1664-462X
	2024-01-08
卷号	14 页码:21
关键词	Perilla frutescens MADS transcription factors genome-wide characterization expression profiles lipid metabolism stress responses
DOI	10.3389/fpls.2023.1299902
通讯作者	Ji, Chunli([email protected]) ; Cui, Hongli([email protected]) ; Li, Runzhi([email protected])
英文摘要	MADS-box transcription factors are widely involved in the regulation of plant growth, developmental processes, and response to abiotic stresses. Perilla frutescens, a versatile plant, is not only used for food and medicine but also serves as an economical oil crop. However, the MADS-box transcription factor family in P. frutescens is still largely unexplored. In this study, a total of 93 PfMADS genes were identified in P. frutescens genome. These genes, including 37 Type I and 56 Type II members, were randomly distributed across 20 chromosomes and 2 scaffold regions. Type II PfMADS proteins were found to contain a greater number of motifs, indicating more complex structures and diverse functions. Expression analysis revealed that most PfMADS genes (more than 76 members) exhibited widely expression model in almost all tissues. The further analysis indicated that there was strong correlation between some MIKC (c)-type PfMADS genes and key genes involved in lipid synthesis and flavonoid metabolism, which implied that these PfMADS genes might play important regulatory role in the above two pathways. It was further verified that PfMADS47 can effectively mediate the regulation of lipid synthesis in Chlamydomonas reinhardtii transformants. Using cis-acting element analysis and qRT-PCR technology, the potential functions of six MIKC (c)-type PfMADS genes in response to abiotic stresses, especially cold and drought, were studied. Altogether, this study is the first genome-wide analysis of PfMADS. This result further supports functional and evolutionary studies of PfMADS gene family and serves as a benchmark for related P. frutescens breeding studies.
资助机构	National Key Research and Development Program of China ; State Key Laboratory of Integrative Sustainable Dryland Agriculture ; Shanxi Agricultural University ; Six New Project of Agriculture Department of Shanxi Province ; National Natural Science Foundation of China ; Key Research and Development PlanningyProject of Shanxi Province ; Science and Technology Innovation PlanningyProjectyof Shanxi Agricultural University ; Outstanding Doctor to Work in Shanxi Province Research Project ; Scientific and Technological Innovation Programs of Higher Education Institutions in Shanxi
收录类别	SCI
语种	英语
关键词[WOS]	FLORAL ORGAN IDENTITY ; INTRON LOSS ; CENTRAL CELL ; EVOLUTION ; ARABIDOPSIS ; PROTEINS ; GAIN ; IDENTIFICATION ; ANTHOCYANINS ; CONSERVATION
研究领域[WOS]	Plant Sciences
WOS记录号	WOS:001154832400001
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.yic.ac.cn/handle/133337/36361
专题	海岸带生物学与生物资源利用重点实验室海岸带生物学与生物资源利用重点实验室_海岸带生物学与生物资源保护实验室
通讯作者	Ji, Chunli; Cui, Hongli; Li, Runzhi
作者单位	1.Shanxi Agr Univ, Inst Mol Agr & Bioenergy, Coll Agr, Jinzhong, Shanxi, Peoples R China 2.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Key Lab Coastal Biol & Biol Resource Utilizat, Yantai, Shandong, Peoples R China
推荐引用方式 GB/T 7714	Liang, Mengjing,Du, Zhongyang,Yang, Ze,et al. Genome-wide characterization and expression analysis of MADS-box transcription factor gene family in Perilla frutescens[J]. FRONTIERS IN PLANT SCIENCE,2024,14:21.
APA	Liang, Mengjing.,Du, Zhongyang.,Yang, Ze.,Luo, Tao.,Ji, Chunli.,...&Li, Runzhi.(2024).Genome-wide characterization and expression analysis of MADS-box transcription factor gene family in Perilla frutescens.FRONTIERS IN PLANT SCIENCE,14,21.
MLA	Liang, Mengjing,et al."Genome-wide characterization and expression analysis of MADS-box transcription factor gene family in Perilla frutescens".FRONTIERS IN PLANT SCIENCE 14(2024):21.